YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110642821, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYHTCPWLN LLNGPLMFKR RYVTLLPLFV LLAACSSKPK PTETETTTGT PSGGFLLEPQ  60
   61 HNVMQMGGDF ANNPNAQQFI DKMVNKHGFD RQQLQEILSQ AKRLDSVLRL MDNQAPTTSV 120
  121 KPPSGPNGAW LRYRKKFITP DNVQNGVVFW NQYEDALNRA WQVYGVPPEI IVGIIGVETR 180
  181 WGRVMGKTRI LDALATLSFN YPRRAEYFSG ELETFLLMAR DEQDDPLNLK GSFAGAMGYG 240
  241 QFMPSSYKQY AVDFSGDGHI NLWDPVDAIG SVANYFKAHG WVKGDQVAVM ANGQAPGLPN 300
  301 GFKTRYSISQ LAAAGLTPQQ PLGNHQQASL LRLDVGTGYQ YWYGLPNFYT ITRYNHSTHY 360
  361 AMAVWQLGQA VALARVQ

Type	Start	End	Confidence
Signal Peptide	1	37	0.97
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	377	0.99