YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110764421
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	382	0.99
Transmembrane Helix	383	407	0.91
Cytoplasmic	408	418	0.87
Transmembrane Helix	419	441	0.87
Non-Cytoplasmic	442	458	0.79
Transmembrane Helix	459	479	0.93
Cytoplasmic	480	499	0.86
Transmembrane Helix	500	519	0.97
Non-Cytoplasmic	520	554	0.92
Transmembrane Helix	555	579	0.82
Cytoplasmic	580	600	0.96
Transmembrane Helix	601	622	0.92
Non-Cytoplasmic	623	641	0.80
Transmembrane Helix	642	662	0.85
Cytoplasmic	663	768	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYMLLLLSI FICAHIVCAG VNTELKKDGE LKEESYEKSE SKSLKEIKEE RASKSKSERL  60
   61 KIREEKREEE EKSKSLNLVV VREKITKLSS WLKEEKDISP LLEEKNGKGL LGLEDVTDEL 120
  121 NIALKSLKEG KKFDTWKFEK GSEDVRSLEE LDTSVVELLK LIKEGKTDHG AIDLEKNGKV 180
  181 LVDLEKISEN ILETCGSQKK TVEVVDDKDK KWNKESDKVG GGLLGGLSGL LNSLKSEKGL 240
  241 LGLLNKNQIE LLIPLISEIK KKNIDFNLFD SVDSVERNLD LKLFTSSVSK VTELLNKGID 300
  301 IQTILNAKNG DEFDLSGKEL KNVKGIFGLI GNQNATRGIT MSMNNETNGS LDGPTGYKLN 360
  361 LTNPDDCNYF ESQSIFSTNW FRGIIYFVYS TVFVVALTGN GLVCYVVHSS PRMKTVTNFF 420
  421 IVNLALGDIL IALFCVPTSS ISTLILQYWP FGPELCPTVI YLQAVSVLVS AYTLVAISID 480
  481 RYIAIMWPLK PRLSKRQAQL LILAVWMLAM LISLPIAIVS KLFQPSTQYK RCNQYICIEV 540
  541 WPSLENRYYY SIALLVLQYV IPITVLVFTY TSIAIMVWGK RPPGEAENIR DQRMARSKRK 600
  601 MVKMMVTVVI VFTVCWLPFN ILNLIMDNNE TVGSWTWFPF VWMILHWLAM SHSCYNPVIY 660
  661 CWMNARFRTG FIAAIGHLPG THRILRRERR DNYNASLDIP LTGFNDSNHS VLRRMNTCTT 720
  721 YISVRRKANG NHTAPARSAS FRNDSFRPMA QQLQRQFTYL ESHTEEQL