YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110642042, gi...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFVSLGFL LIIIVPAFIS CHARAPWIHI HQDENGELCS NCSTILSSMN RKEYAMNPYI  60
   61 YLGGAILAEV IGTTLMKFSE GFTRLWPSVG TIICYCASFW LLAQTLAYIP TGIAYAIWSG 120
  121 VGIVLISLLS WGFFGQRLDL PAIIGMMLIC AGVLVINLLS RSAPH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.34
Transmembrane Helix	7	24	0.67
Non-Cytoplasmic	25	57	0.57
Transmembrane Helix	58	76	0.82
Cytoplasmic	77	84	0.43
Transmembrane Helix	85	107	0.85
Non-Cytoplasmic	108	111	0.44
Transmembrane Helix	112	134	0.89
Cytoplasmic	135	139	0.47
Transmembrane Helix	140	160	0.92
Non-Cytoplasmic	161	165	0.40