YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110833473, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISDSLMLLS SSPTLLIGLC VVMGLLVGSF LNVVIHRLPL MMERSWKQEA REVLELPAEE  60
   61 TDGIFNLATP RSRCPKCGHA IRWYENIPVL SWLALRGKCR GCKTPISKRY PIIEIVSGIL 120
  121 AGLCAWHFGY GPWLAFTLFA TWVLLAAAMI DADTTLLPDT LNYWLLWAGL LAAVTGVSPV 180
  181 SLNDAVIGAM MGYLSLWSIY WLFKLITGKE GMGYGDFKLL AALGAWVGWQ YLPVIILLSS 240
  241 IVGLVFAIAM MIFSGERRAQ IPFGPYLATA GWIALLWGDS IVSSYLGMFK L

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.92
Transmembrane Helix	14	35	0.95
Cytoplasmic	36	109	0.95
Transmembrane Helix	110	129	0.86
Non-Cytoplasmic	130	133	0.67
Transmembrane Helix	134	154	0.80
Cytoplasmic	155	162	0.62
Transmembrane Helix	163	197	0.77
Non-Cytoplasmic	198	228	0.46
Transmembrane Helix	229	253	0.87
Cytoplasmic	254	262	0.54
Transmembrane Helix	263	287	0.80
Non-Cytoplasmic	288	291	0.57