YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110835371, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	268	0.99
Transmembrane Helix	269	290	0.92
Cytoplasmic	291	298	0.62
Transmembrane Helix	299	318	0.84
Non-Cytoplasmic	319	325	0.76
Transmembrane Helix	326	344	0.95
Cytoplasmic	345	358	0.64
Transmembrane Helix	359	378	0.85
Non-Cytoplasmic	379	406	0.89
Transmembrane Helix	407	425	0.95
Cytoplasmic	426	453	0.96
Transmembrane Helix	454	476	0.91
Non-Cytoplasmic	477	491	0.77
Transmembrane Helix	492	513	0.84
Cytoplasmic	514	522	0.71
Transmembrane Helix	523	541	0.93
Non-Cytoplasmic	542	558	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKFSRILI ALLIALQVSV SWAEEPLQEQ TTPTQPITEN SEGATGIPTP TLQNILDRLT  60
   61 SRSFDEKEAA IRELANQDNP RVIALLNALM NRELVHNRKD NSIVLGSKKD GQWELRDPET 120
  121 TQLIGQVDSR AARPVIINNR LRTVINNQLA LAALNDPDSD VRYRAANQLI GNDDPEMLTA 180
  181 LASRRAQEAD PRVAVQIDTA LNIAALRSDD LSTRLSAIDT LAGNLHPDVK NAFNERLRVT 240
  241 QHPTEKKALE KAIARIEARI ERFQTADTVF FGLSLGSVLL LAAIGLAITF GVMGVINMAH 300
  301 GELIMLGAYT TYVVQQLLPT SHEWSLLIAI PAAFLVSAFV GILIERFVIR FLYGRPLETL 360
  361 LATFGVSLIL QQAVRVIFSP LNRTVITPEW MSGALEINPV FSLTYNRLYI IFFALAVFLA 420
  421 LLTLLKKTRL GLQVRAVSQN RATARSLGIR SERVNALTFG LGSGIAGVAG VALAQLTNVG 480
  481 PNLGQSYIID SFMVVVFGGV GNLWGTLTAA FSLGIANKLL EPMAGAVLAK IVVLVFIILF 540
  541 IQRKPRGLFP QRGRAAEE