YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110681997, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	302	0.65
Transmembrane Helix	303	324	0.90
Cytoplasmic	325	342	0.61
Transmembrane Helix	343	365	0.87
Non-Cytoplasmic	366	377	0.61
Transmembrane Helix	378	403	0.82
Cytoplasmic	404	420	0.63
Transmembrane Helix	421	444	0.88
Non-Cytoplasmic	445	452	0.58
Transmembrane Helix	453	476	0.80
Cytoplasmic	477	479	0.45
Transmembrane Helix	480	497	0.46
Non-Cytoplasmic	498	498	0.40
Transmembrane Helix	499	523	0.72
Cytoplasmic	524	560	0.53
Transmembrane Helix	561	583	0.86
Non-Cytoplasmic	584	600	0.74
Transmembrane Helix	601	621	0.96
Cytoplasmic	622	630	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISQLLSLD TIKLDLAASN KNEVIDQLVD VLWDAGKLTD KNLYKEEILK RESLSSTGIG  60
   61 ERIAIPHAKT KAVKNASLAL GLYKDGVDYD SLDGEPVNIV FMIAAPDGAN DEHLETLSRL 120
  121 SVLLMNPDFK NGLLNAKTPE EVISLLDKFE ENEESDEINN SNEIENNSNK KYILAVTACP 180
  181 TGIAHTYMAA DSLNKTAKEM DINIKVETNG STGVKNRLTQ EDIDNADGII VAADKQVEMA 240
  241 RFNGKKVVIV PVVQAMKRPK ELINEALSGS APVYSHSGDS SNQSSGKTER RGFYKHLMNG 300
  301 VSNMLPFVVG GGILIAISFM FGIHSAEIND PTFSPIAKLL KDIGGGNAFF LMIPVLAGFI 360
  361 GSSIADRPGF APAMVGGLIA ANSGSGFLGG LIAGFLGGYV VVLLKKIFSK LPQSLEGIKP 420
  421 VLLYPLFGIL ITGALMYLVI VGPVTALNNN IAIWLQNMGT GNLVLLGIVL GGMMAIDMGG 480
  481 PINKAAFTFG IAMIASGNYY PHAAIMAGGM VPPLATALAT TFFKNKFTKD ERDAGTTNYI 540
  541 MGLTFITEGA IPFAAADPFR VIPACVIGSA LAGGLSMVFK IGLPAPHGGI FVIPVVEGNP 600
  601 LLYLLSILIG SIVAALIIGF LKKPVNEINK