YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PQLC1_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEGLGWLL VPLHQLVSWG AAGAMVFGGV VPYIPQYRDI RRTQNAEGFS TYVCLVLLVA  60
   61 NILRILFWFG RHFESPLLWQ SVVMILTMLL MLKLCTEVRV ANELNLKRRV FSDFDPHHFW 120
  121 HWSSFADYVQ CVLAFTGVAG YITYLSIDSA LFVETLGFLA VLTEAMLGVP QLYRNHRHQS 180
  181 TEGMSIKMVL MWTSGDTFKT AYFLLNGAPL QFSVCGLLQV LVDLAILGQA YVFTRYPLKP 240
  241 APHAAHPASA KAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.88
Transmembrane Helix	16	35	0.94
Cytoplasmic	36	47	0.88
Transmembrane Helix	48	68	0.95
Non-Cytoplasmic	69	76	0.81
Transmembrane Helix	77	96	0.93
Cytoplasmic	97	118	0.87
Transmembrane Helix	119	143	0.80
Non-Cytoplasmic	144	149	0.69
Transmembrane Helix	150	173	0.76
Cytoplasmic	174	187	0.75
Transmembrane Helix	188	205	0.47
Non-Cytoplasmic	206	209	0.42
Transmembrane Helix	210	233	0.58
Cytoplasmic	234	253	0.71