YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|151942423
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSWNIRIR RRSWFRFILP IIVLGLLCYG TWAYCHKLCY EQVDKRLRQK SVSVGLICAV  60
   61 CFLDVVVIFI WLQIVILVGP GTQPHVAPFL ILPIASEEKT SNTSQNTSVE YDAVVPPKCY 120
  121 QSDPHGYPIW CSECQSLKME RTHHSSELGH CIPRFDHYCM WIGTVIGRDN YRLFVQFAAY 180
  181 FSTLLLIMWV SICVYIRIIT QHNHNYSPNL NANIISTLVF AILGWLLTAS LLASSIFYMS 240
  241 QNKTSLEAII DSKRKKFGTR KIFCYYSEAN KLRFVVEFDR SEFHSFWDKK SILANIKDFM 300
  301 GSNILMWIIP LGKPYTSRCK SDGKSGSKTT LVEILGPYEE TLSDYTIQAI EDKISRGEYL 360
  361 ATLRASGDDS DPAY

Type	Start	End	Confidence
Cytoplasmic	1	13	0.69
Transmembrane Helix	14	35	0.91
Non-Cytoplasmic	36	51	0.69
Transmembrane Helix	52	75	0.87
Cytoplasmic	76	176	0.70
Transmembrane Helix	177	199	0.92
Non-Cytoplasmic	200	213	0.66
Transmembrane Helix	214	238	0.85
Cytoplasmic	239	374	0.70