YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|87044961, gi|...
Protein type: Transmembrane
Type Confidence: 0.58
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVGEEPLEK AAGARPAKDP NTYKVLSLVL SVCVLTTILG CIFGLKPSCA KEVKSCKGRC  60
   61 FERTFGNCRC DVACVDLGNC CLDYQETCIE PERIWTCNKF RCGEKRLSRS LCACSDDCKE 120
  121 RGDCCINYSA VCQGEKSWVE ETCENINEPQ CPEGFEMPPT LLFSLDGFRA EYLHTWGGLL 180
  181 PVISKLKKCG TYAKNMRPVY PTKTFPNHYS IVTGLYPESH GIIDNKMYDP KMNASFSLKS 240
  241 KEKFNPEWYK GEPIWLTAKY QGLRSGTFFW PGSDVKINGI FPDIYKIYNG SVPFEERILA 300
  301 ILQWLRLPKD ERPHFYTLYL EEPYSSGHSY GPVSSEVIKA LQRVDNMVGM LMDGLKELNL 360
  361 HQCLNLILIS DHGMEQGSCK KYIYLNKYLG DTKNIKVIYG PAARLRPSDV PEKYYSFNYE 420
  421 NIARNLSCRE PNQHFKPYLK HFLPKRLHFA KSDRIEPLTF YLDPQWQLAL SPSERKYCGS 480
  481 GFHGSDNVFS NMQALFVGYG PGFQHGIEVD SFENIEVYNL MCDLLNLTPA PNNGTHGSLN 540
  541 HLLKNPIYTP KHPKEVQPSV QCPLAGSPRD SLGCSCNPSI LPIVDFQTQF NLTTAEEKNI 600
  601 NRASLPYGRP RLLQKKSSVC LLYQHQFVSG YSHDVLMPLW TSYTVNRNDS FSTEDFSNCL 660
  661 YQDLRISFSP IHNCSFYKNN AKLSYGFLSP PQLSKDSSQI YSEALLTSNI VPMYQSFQVI 720
  721 WRYFHDTLLQ RYAEERNSIN VVSGPVFDSD YDGRYDSSEA LKRNRRVIRN QEILIPTHFF 780
  781 IVITSCKNTS QTPLQCDNLD PLAFILPHRS DNSESCVHEK RECSWIEELL MMHRARIMDV 840
  841 EHITGLSFYQ ERKEPVSDIL KLKTHLPTFS QED

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle