YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VATO_YEAST
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKESKDDDM SLGKFSFSHF LYYLVLIVVI VYGLYKLFTG HGSDINFGKF LLRTSPYMWA  60
   61 NLGIALCVGL SVVGAAWGIF ITGSSMIGAG VRAPRITTKN LISIIFCEVV AIYGLIIAIV 120
  121 FSSKLTVATA ENMYSKSNLY TGYSLFWAGI TVGASNLICG IAVGITGATA AISDAADSAL 180
  181 FVKILVIEIF GSILGLLGLI VGLLMAGKAS EFQ

Type	Start	End	Confidence
Cytoplasmic	1	19	0.86
Transmembrane Helix	20	39	0.93
Non-Cytoplasmic	40	58	0.88
Transmembrane Helix	59	81	0.93
Cytoplasmic	82	100	0.80
Transmembrane Helix	101	122	0.93
Non-Cytoplasmic	123	144	0.84
Transmembrane Helix	145	169	0.88
Cytoplasmic	170	183	0.72
Transmembrane Helix	184	206	0.91
Non-Cytoplasmic	207	213	0.85