YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPO75
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.89
Transmembrane Helix	34	56	0.87
Cytoplasmic	57	124	0.93
Transmembrane Helix	125	145	0.89
Non-Cytoplasmic	146	187	0.89
Transmembrane Helix	188	207	0.95
Cytoplasmic	208	478	0.96
Transmembrane Helix	479	501	0.90
Non-Cytoplasmic	502	527	0.88
Transmembrane Helix	528	547	0.95
Cytoplasmic	548	566	0.87
Transmembrane Helix	567	590	0.93
Non-Cytoplasmic	591	610	0.84
Transmembrane Helix	611	632	0.76
Cytoplasmic	633	661	0.90
Transmembrane Helix	662	683	0.92
Non-Cytoplasmic	684	688	0.75
Transmembrane Helix	689	709	0.97
Cytoplasmic	710	729	0.83
Transmembrane Helix	730	748	0.93
Non-Cytoplasmic	749	754	0.69
Transmembrane Helix	755	774	0.92
Cytoplasmic	775	868	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNATKELTFN LLNKFQDKER FGSAQRHAGI SLKGFISGIL FSFLYFLFQL SLFIILRSRF  60
   61 KTIYQANVVL KIHPGSKVCF AKKKIKNYWS LFAFLKQLPG RMLDPMEKFE RNERYGLDNY 120
  121 LFLRFLKLLI FFFAVLSIIN IPILIPIHYF SRDILKENEG ERYEQSFRTT SKLDKWTMSN 180
  181 LSPNSSNTLI CHLFLSIFVV LWFHFILSSE LRFVNRLGYS VLTKSKYQNI LYLEGFSSKL 240
  241 VTQSISLETF FQPLHSDCFG VTHFIPKNLK KVHKLEIKLN KLQKSKEQII FEIILEKYFR 300
  301 RVSIHRHLIA NHKRFFFSKL KNHLLFQYKK LVFLTQFRIS YYCTKIRLRW KKSSIFPLYY 360
  361 PKLYVNTETI LERKYRILDK IIRKEKLIKF QVNSLKATSE TKQALPDDLS SGTDIYMDKM 420
  421 FITFKSTLLS NVIGELLSYR LPTQNLKVII GPNVNDIIWR NILDSSPLWK SAKYFSANIL 480
  481 RIFVIIGWIL PVAFLGLISQ IPNISSLIPF TKIIHFQSPF IREVAKNLIP IVTLIIIIEI 540
  541 VPYFFRWLSY LRGLKTGAQI EADVQNWYFV FVFIHLFVVV TISSGFSIII ERLLNNPVSI 600
  601 PALLANDLPK CANFFCSFVL IRGMAYAGGN LLRIKELLFE LFYYKWKRST PHAQFKRLKT 660
  661 SLFFQLGSIY PIFSVLGCIG IIYSVVAPII LLLCCISFSM VFFSFSYLFK YQYNKENYSE 720
  721 TFGKLYIQAL MQLYAGIYFM EFCLLGLFTL FDQYTLSTIM LVVFALTVIT HSKISKQIKS 780
  781 KPQRIPTLEY LSNLTEERKD QFCQESYTFH DIFSICRNSD EIWLPRDKLG ISEEEQSFLE 840
  841 KSYHLKFDLN MYSMNLFGDC HLENSHLH