YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|151941286
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.63
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLQLAAVAT LAVLTSPAFG RVLPDGKYVK IPFTKKKNGD NGELSKRSNG HEKFVLANEQ  60
   61 SFYSVELAIG TPSQNLTVLL DTGSADLWVP GKGNPYCGSV MDCDQYGVFD KTKSSTFKAN 120
  121 KSSPFYAAYG DGTYAEGAFG QDKLKYNELD LSGLSFAVAN ESNSTFGVLG IGLSTLEVTY 180
  181 SGKVAIMDKR SYEYDNFPLF LKHSGAIDAT AYSLFLNDES QSSGSILFGA VDHSKYEGQL 240
  241 YTIPLVNLYK SQGYQHPVAF DVTLQGLGLQ TDKRNITLTT TKLPALLDSG TTLTYLPSQA 300
  301 VALLAKSLNA SYSKTLGYYE YTCPSSDNKT SVAFDFGGFR INAPLSDFTM QTSVGTCVLA 360
  361 IIPQAGNATA ILGDSFLRNA YVVYDLDNYE ISLAQAKYGT GKENVEVIKS TVPSAIRAPS 420
  421 YNNTWSNYAS ATSGGNIFTT VRTFNGTSTA TTTRSTTTKK TNSTTTAKST HKSKRALQRA 480
  481 ATNSASSIRS TLGLLLVPSL LILSVFFS

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	487	0.96
Transmembrane Helix	488	507	0.59
Cytoplasmic	508	508	0.50