YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAT4_BOVIN
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.96
Transmembrane Helix	14	37	0.87
Non-Cytoplasmic	38	87	0.97
Transmembrane Helix	88	109	0.94
Cytoplasmic	110	117	0.90
Transmembrane Helix	118	137	0.95
Non-Cytoplasmic	138	144	0.82
Transmembrane Helix	145	167	0.93
Cytoplasmic	168	176	0.82
Transmembrane Helix	177	197	0.91
Non-Cytoplasmic	198	204	0.76
Transmembrane Helix	205	227	0.92
Cytoplasmic	228	318	0.98
Transmembrane Helix	319	341	0.88
Non-Cytoplasmic	342	359	0.90
Transmembrane Helix	360	383	0.88
Cytoplasmic	384	422	0.96
Transmembrane Helix	423	446	0.85
Non-Cytoplasmic	447	452	0.76
Transmembrane Helix	453	475	0.87
Cytoplasmic	476	482	0.79
Transmembrane Helix	483	503	0.88
Non-Cytoplasmic	504	513	0.78
Transmembrane Helix	514	537	0.90
Cytoplasmic	538	568	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTLATAHR RRWWMACTAV VENLLFSAVL LGWGSLLIML KSEGFYSYLC TEPENVTNVT  60
   61 VGATAEPEHE EVSRMNGWLS CKAQDEMLNL AFTVGSFLLS AITLPLGIVM DKYGPRKLRL 120
  121 LGSACFAVSC LLIAYGASNP NSLSVLIFIA LALNGFGGMC MTFTSLTLPN MFGDLRSTFI 180
  181 ALMIGSYASS AVTFPGVKVI YDFGASFIVI LVVWAGCSGL VFLNCFFNWP LEPFPGPEDM 240
  241 DYTVKIKFSW LGFDHKITGK QFYKQVTTVG RRLSVGSSMR SAKEQAALQE GHKLCLSTVD 300
  301 LEVKCQPDAT AAPSFMHSVF SPILLLSLVT MCVTQLRLIF YMGAMNNILQ FLVSGDQAVV 360
  361 SLYTSIFGVL QLLCLLTAPV IGYIMDWRLK ECEDASEEPE EKDANPGEKK KKRDRQIQKI 420
  421 TNATRAFAFT NLLLVGFGVT CLIPNLPLQI LSFILHTIVR GFIHSAVGGL YAAVYPSTQF 480
  481 GSLTGLQSLI SALFALLQQP LFLAMMGPLQ GDPLWVNVGL LVVSMLGFCL PLYLICYRRQ 540
  541 LERQLERKRE DDKLFLKLNG SSNQEAFV