YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110084514
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSWVLSEC GLRPLPRIYL QTRAGVTTKS CNLFKLKQLP VSESYNLDPS FNISSCSKQR  60
   61 NWALNVAAPV NNFRTVSAQE DDKEREGVNE EVKGEEEFFD PGSPPPFKLA DIRAAIPKHC 120
  121 WVKDPWRSMS YVVRDVAVVF GLAAIAAFFN NWVVWPLYWF SQGTMFWALF VLGHDCGHGS 180
  181 FSSNPKLNSV VGHLLHSSIL VPYHGWRISH RTHHQNHGHV ENDESWHPLS EKIFKSLDNL 240
  241 TKMLRFTLPF PLLAYPFYLW GRSPGKKGSH FHPDSDLFVP NERKDIITST ACWSAMAALL 300
  301 VGLNFILGPI QMLKLYGIPY WIFVMWLDLV TYLHHHGHED KLPWYRGKEW SYLRGGLTTV 360
  361 DRDYGWINNI HHDIGTHVIH HLFPQIPHYH LIEATEAAKP VIGKYYREPR TSGPLPFHLL 420
  421 GSLVRSMKED HYVSDTGDIV YYQKDPNPWG GKKTE

Type	Start	End	Confidence
Cytoplasmic	1	130	0.99
Transmembrane Helix	131	153	0.83
Non-Cytoplasmic	154	157	0.54
Transmembrane Helix	158	178	0.54
Cytoplasmic	179	286	0.65
Transmembrane Helix	287	310	0.84
Non-Cytoplasmic	311	316	0.64
Transmembrane Helix	317	336	0.83
Cytoplasmic	337	455	0.82