YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YOR378W
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.98
Transmembrane Helix	39	61	0.82
Non-Cytoplasmic	62	81	0.82
Transmembrane Helix	82	103	0.90
Cytoplasmic	104	111	0.86
Transmembrane Helix	112	133	0.90
Non-Cytoplasmic	134	142	0.79
Transmembrane Helix	143	164	0.88
Cytoplasmic	165	172	0.90
Transmembrane Helix	173	195	0.92
Non-Cytoplasmic	196	202	0.83
Transmembrane Helix	203	223	0.96
Cytoplasmic	224	241	0.91
Transmembrane Helix	242	261	0.94
Non-Cytoplasmic	262	271	0.81
Transmembrane Helix	272	291	0.94
Cytoplasmic	292	308	0.79
Transmembrane Helix	309	329	0.90
Non-Cytoplasmic	330	346	0.88
Transmembrane Helix	347	367	0.93
Cytoplasmic	368	374	0.82
Transmembrane Helix	375	395	0.93
Non-Cytoplasmic	396	402	0.73
Transmembrane Helix	403	425	0.85
Cytoplasmic	426	435	0.86
Transmembrane Helix	436	459	0.86
Non-Cytoplasmic	460	477	0.90
Transmembrane Helix	478	499	0.93
Cytoplasmic	500	515	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSSSVTQK NLDTNAEALK KEDKVLSEFD IQDERPKSLL WESAFVGVLC SAQLMTQAGL  60
   61 GQSLAPLHII GNSFGTTNAG QLSWFASAYS LTVGTFILIA GRLGDIFGHK KFFVLGFFWY 120
  121 ALWSLLAGFS VYSNQIFFDC CRAFQGMGPA FLLPNAIAIL GRTYKPGRRK NMVFSLFGAS 180
  181 APGGFFLGAV FSSMLGQLAW WPWAYWIMGI ACFVLAVAGY FVIPHTPMPS RDASSFKLLE 240
  241 RIDFAGSVTG VVGLILFNFA WNQGPVVGWQ TPYTYALLIV GTFFLVIFAY IESRAAFPLL 300
  301 PFAALSSDTA FVLSCIAAGW ASFGIWIFYT WQFMEDSRGQ TPLLSSAQFS PVAISGFCAA 360
  361 VTTGFLLSHT PPSTVMLFAM TAFTVGTILI ATAPVHQTYW AQTFVSIIVM PWGMDMSFPA 420
  421 ATIMLSDSMP HEHQGLAASL VNTVVNYSIS IGLGIAGTIE SRVNDGGAKP LKGYRCSWYM 480
  481 GIGLSGLGIF VAATYAWSTF MKSKKRISEK QHFIE