YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|255518425
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKMILGVT GCPTGIAHTF MAEEALKNSA RELGCDIKVE TNGAIGVENK LTAKDIEMAD  60
   61 AIIVACDKNV DMDRFNGKPV IEVPVKEGIH KANELIQRCI DGKVAIRKGN LSSSKIAEEG 120
  121 NLSFGQKLYK DLMNGVSHML PLVVAGGVLT AISFLWGIYS FDPNSEQYNQ IAATLKSVGG 180
  181 YSMNLMVPVL AAFIAQSISG RAGMLAGLVG GMISFDTGSG FLGGIISGFL AGYLVKLFVH 240
  241 LLRKLPRQLE GLKSIFIIPI VSVGLVGVAM LLLGGPCSAL NNAMMNFLSG LQNSSPIILG 300
  301 IVIGCMSAFD MGGPVNKAAY VTGTMLLGQG NYLFMAGVSA ACITPPLVIA IASTLFKNRF 360
  361 TEEDRAAGLI NYILGSTHIT EGAIPFAAKN PLKVLPVLMI ASSISSILTY IMKIEVPAPH 420
  421 GGFLVLGLVN KPLLWVGCIF VGSLVGAVLY MMVTPKVVNE KNTIENTNAT KDGHKNESAE 480
  481 SENVSNNISL YSEETVILDV KGKNKTDVID EMIGILDKSG VLLDKKKFKE EILKREEISS 540
  541 TGFGMGIAIP HAKTDAVKVP RVAVGVSKEG FDFESEDGSL AHIIFMISAT DNGDNLHLKT 600
  601 LSQLSSKLMN EEFLNELLNS KTSREIVSKL NNEEIKSV

Type	Start	End	Confidence
Cytoplasmic	1	135	0.67
Transmembrane Helix	136	159	0.87
Non-Cytoplasmic	160	177	0.60
Transmembrane Helix	178	200	0.75
Cytoplasmic	201	204	0.33
Transmembrane Helix	205	239	0.67
Non-Cytoplasmic	240	254	0.53
Transmembrane Helix	255	277	0.91
Cytoplasmic	278	289	0.46
Transmembrane Helix	290	313	0.72
Non-Cytoplasmic	314	331	0.62
Transmembrane Helix	332	356	0.86
Cytoplasmic	357	393	0.57
Transmembrane Helix	394	414	0.89
Non-Cytoplasmic	415	432	0.66
Transmembrane Helix	433	453	0.96
Cytoplasmic	454	638	0.71