YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149030212, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFKVLPEDR TVLFAAILLV GHLSCKASCE TGDCRQQEFK DRSGNCVLCK QCGPGMELSK  60
   61 ECGFGYGEDA QCVPCRPHRF KEDRGFQKCK PCVDCALVNR FQRANCSHTS DAVCGDCLPG 120
  121 FYRKTKLVGF QDMECVPCGD PPPPYEPHCT SKVNLVKISS TVSSPRDTAL AAVICSALAT 180
  181 VLLALLILCV IYCKRQFMEK KPSWSLRSQD IQYNGSELSC FDQPQLRHCA HRACCQYHRD 240
  241 SVQTYGPVHL IPPLCCEEAR SSARAALGCG LHSTATLQER NTASVGDAMP VFFGSVSRSI 300
  301 CAEFSDAWPL MQNPLGGDSS LCDSYPELTG EDINSLNPEN ESSTSVDSNG GQDLAGAAAP 360
  361 DSSGDFSENT DSPRYGDADT VWEQTLAQDA QRTPSREGWE ASENLNLATS TAFQDA

Type	Start	End	Confidence
Signal Peptide	1	27	0.98
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	168	0.99
Transmembrane Helix	169	192	0.94
Cytoplasmic	193	416	0.97