YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLC43A1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.96
Transmembrane Helix	14	39	0.83
Non-Cytoplasmic	40	75	0.98
Transmembrane Helix	76	97	0.93
Cytoplasmic	98	105	0.86
Transmembrane Helix	106	125	0.94
Non-Cytoplasmic	126	133	0.78
Transmembrane Helix	134	154	0.95
Cytoplasmic	155	164	0.75
Transmembrane Helix	165	185	0.90
Non-Cytoplasmic	186	191	0.76
Transmembrane Helix	192	214	0.90
Cytoplasmic	215	302	0.97
Transmembrane Helix	303	324	0.88
Non-Cytoplasmic	325	357	0.89
Transmembrane Helix	358	376	0.91
Cytoplasmic	377	415	0.96
Transmembrane Helix	416	439	0.85
Non-Cytoplasmic	440	448	0.68
Transmembrane Helix	449	471	0.78
Cytoplasmic	472	478	0.64
Transmembrane Helix	479	498	0.87
Non-Cytoplasmic	499	509	0.72
Transmembrane Helix	510	533	0.89
Cytoplasmic	534	559	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPTLQQAYR RRWWMACTAV LENLFFSAVL LGWGSLLIIL KNEGFYSSTC PAESSTNTTQ  60
   61 DEQRRWPGCD QQDEMLNLGF TIGSFVLSAT TLPLGILMDR FGPRPVRLVG SACFTASCTL 120
  121 MALASRDVEA LSPLIFLALS LNGFGGICLT FTSLTLPNMF GNLRSTLMAL MIGSYASSAI 180
  181 TFPGIKLIYD AGVAFVVIMF TWSGLACLIF LNCTLNWPIE AFPAPEEVNY TKKIKLSGLA 240
  241 LDHKVTGDLF YTHVTTMGQR LSQKAPSLED GSDAFMSPQD VRGTSENLPE RSVPLRKSLC 300
  301 SPTFLWSLLT MGMTQLRIIF YMAAVNKMLE YLVTGGQEHE TNEQQQKVAE TVGFYSSVFG 360
  361 AMQLLCLLTC PLIGYIMDWR IKDCVDAPTQ GTVLGDARDG VATKSIRPRY CKIQKLTNAI 420
  421 SAFTLTNLLL VGFGITCLIN NLHLQFVTFV LHTIVRGFFH SACGSLYAAV FPSNHFGTLT 480
  481 GLQSLISAVF ALLQQPLFMA MVGPLKGEPF WVNLGLLLFS LLGFLLPSYL FYYRARLQQE 540
  541 YAANGMGPLK VLSGSEVTA