YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114763662, gi...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEGASLSQI ETFYEVMRSQ GITRRSFMKY CSLTAAALGL GPAFVPKIAH AMETKPRTPV  60
   61 IWVHGLECTC CSESFIRSAH PLAKDVVLSM ISLDYDDTLM AAAGHQAEAA LQDTIDKYKG 120
  121 NYILAVEGNP PLNEDGMYCI VGGKPFVDQL KHAAEHAKAI ISWGACASYG CVQAAKPNPT 180
  181 RATPVHKVIT DKPIIKVPGC PPIAEVMTGV ITYMLTFDRL PELDRQGRPA MFYSQRIHDK 240
  241 CYRRPHFDAG QFVEAWDDEN ARKGYCLYKM GCKGPTTYNA CSTVRWNEGV SFPIQSGHGC 300
  301 IGCSEDGFWD QGSFYNRVTD LTQFGVEANA DKIGMAAAGV VGGGIALHAA VSALKSAQKK 360
  361 TQSSKEEV

Type	Start	End	Confidence
Cytoplasmic	1	26	0.59
Transmembrane Helix	27	45	0.55
Non-Cytoplasmic	46	368	0.91