YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM9SF4
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.93
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	278	0.99
Transmembrane Helix	279	302	0.89
Cytoplasmic	303	345	0.96
Transmembrane Helix	346	369	0.88
Non-Cytoplasmic	370	376	0.82
Transmembrane Helix	377	398	0.92
Cytoplasmic	399	413	0.87
Transmembrane Helix	414	436	0.91
Non-Cytoplasmic	437	447	0.76
Transmembrane Helix	448	469	0.91
Cytoplasmic	470	499	0.91
Transmembrane Helix	500	522	0.89
Non-Cytoplasmic	523	532	0.79
Transmembrane Helix	533	558	0.87
Cytoplasmic	559	566	0.91
Transmembrane Helix	567	589	0.91
Non-Cytoplasmic	590	605	0.89
Transmembrane Helix	606	630	0.87
Cytoplasmic	631	642	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAMDWLPW SLLLFSLMCE TSAFYVPGVA PINFHQNDPV EIKAVKLTSS RTQLPYEYYS  60
   61 LPFCQPSKIT YKAENLGEVL RGDRIVNTPF QVLMNSEKKC EVLCSQSNKP VTLTVEQSRL 120
  121 VAERITEDYY VHLIADNLPV ATRLELYSNR DSDDKKKEKD VQFEHGYRLG FTDVNKIYLH 180
  181 NHLSFILYYH REDMEEDQEH TYRVVRFEVI PQSIRLEDLK ADEKSSCTLP EGTNSSPQEI 240
  241 DPTKENQLYF TYSVHWEESD IKWASRWDTY LTMSDVQIHW FSIINSVVVV FFLSGILSMI 300
  301 IIRTLRKDIA NYNKEDDIED TMEESGWKLV HGDVFRPPQY PMILSSLLGS GIQLFCMILI 360
  361 VIFVAMLGML SPSSRGALMT TACFLFMFMG VFGGFSAGRL YRTLKGHRWK KGAFCTATLY 420
  421 PGVVFGICFV LNCFIWGKHS SGAVPFPTMV ALLCMWFGIS LPLVYLGYYF GFRKQPYDNP 480
  481 VRTNQIPRQI PEQRWYMNRF VGILMAGILP FGAMFIELFF IFSAIWENQF YYLFGFLFLV 540
  541 FIILVVSCSQ ISIVMVYFQL CAEDYRWWWR NFLVSGGSAF YVLVYAIFYF VNKLDIVEFI 600
  601 PSLLYFGYTA LMVLSFWLLT GTIGFYAAYM FVRKIYAAVK ID