YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114594518
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKQTKARV TSTSRFLNPY VVCFIVVAGV VILAVTIALL VYFLAFDQKS YFYRSSFQLL  60
   61 NVEYNSQLNS PATQEYRTLS GRIESLITKT FKESNLRNQF IRAHVVKLRQ DGSGVRADVV 120
  121 MKFRFTRNNN GASMKSRIES VLQQMLNNSG NLEINPSTEI TSLTDQAAAN WLINECGAGP 180
  181 DLITLSEQRI LGGTEAEEGS WPWQVSLRLN NAHHCGGSLI NNMWILTAAH CFRSNSNPRD 240
  241 WIATSGISTT FPKLRMRVRN ILIHNNYKSA THENDIALVR LENSVTFTKD IHSVCLPAAT 300
  301 QNIPPGSTAY VTGWGAQEYA GHTVPELRQG QVRIISNDVC NAPYSYNGAI LSGMLCAGVP 360
  361 QGGVDACQGD SGGPLVQEDS RRLWFIVGIV SWGDQCGLPD KPGVYTRVTA YLDWIRQQTG 420
  421 I

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	45	0.95
Non-Cytoplasmic	46	421	0.99