YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114597246
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPLSATQVE CPVCILVDLA DDASRRKQLE IPGPERGPCR PEGQELSTGG SGRVSAPASP  60
   61 RPKAACAINT RPTCRGDTVF PGLGGTDNMN VPFKRPKLQD SPGPVSLQEP LRPDALCSWE 120
  121 EGAPPPAHQC AARAQAQPPL SGDQRDISGL AARCALSPRV RTAVDPVCEG VGGAVEWLPC 180
  181 GVGGEFTIRS AIGIIRVRAV TLGDHGWEVS YRTFLPGGVA AAVSKTAVAP IERVKLLLQV 240
  241 QHASKQISAE KQYKGIIDCV VRIPKEQGFL SFWRGNLANV IRYFPTQALN FAFKDKYKQL 300
  301 FLGGVDRHKQ FWRYFAGNLA SGGAAGATSL CFVYPLDFAR TRLAADVGKG AAQREFHGLG 360
  361 DCIIKIFKSD GLRGLYQGFN VSVQGIIIYR AAYFGVYDTA KGMLPDPKNV HIFVSWMIAQ 420
  421 SVTAVAGLVS YPFDTVRRRM MMQSGRKGAD IMYTGTVDCW RKIAKDEGAK AFFKGAWSNV 480
  481 LRGMGGAFVL VLYDEIKKYV

Type	Start	End	Confidence
Non-Cytoplasmic	1	313	0.65
Transmembrane Helix	314	334	0.73
Cytoplasmic	335	373	0.62
Transmembrane Helix	374	393	0.59
Non-Cytoplasmic	394	411	0.89
Transmembrane Helix	412	433	0.90
Cytoplasmic	434	500	0.84