YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLC28A1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.99
Transmembrane Helix	81	102	0.95
Non-Cytoplasmic	103	108	0.82
Transmembrane Helix	109	129	0.95
Cytoplasmic	130	149	0.97
Transmembrane Helix	150	170	0.96
Non-Cytoplasmic	171	177	0.90
Transmembrane Helix	178	196	0.94
Cytoplasmic	197	205	0.72
Transmembrane Helix	206	224	0.86
Non-Cytoplasmic	225	260	0.76
Transmembrane Helix	261	285	0.85
Cytoplasmic	286	337	0.60
Transmembrane Helix	338	360	0.80
Non-Cytoplasmic	361	365	0.63
Transmembrane Helix	366	386	0.83
Cytoplasmic	387	423	0.89
Transmembrane Helix	424	446	0.75
Non-Cytoplasmic	447	457	0.61
Transmembrane Helix	458	479	0.57
Cytoplasmic	480	531	0.79
Transmembrane Helix	532	554	0.91
Non-Cytoplasmic	555	567	0.77
Transmembrane Helix	568	592	0.85
Cytoplasmic	593	649	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENDPSRRRE SISLTPVAKG LENMGADFLE SLEEGQLPRS DLSPAEIRSS WSEAAPKPFS  60
   61 RWRNLQPALR ARSFCREHMQ LFRWIGTGLL CTGLSAFLLV ACLLDFQRAL ALFVLTCVVL 120
  121 TFLGHRLLKR LLGPKLRRFL KPQGHPRLLL WFKRGLALAA FLGLVLWLSL DTSQRPEQLV 180
  181 SFAGICVFIA LLFACSKHHC AVSWRAVSWG LGLQFVLGLL VIRTEPGFIA FEWLGEQIRI 240
  241 FLSYTKAGSS FVFGEALVKD VFAFQVLPII VFFSCVISVL YHVGLMQWVI LKIAWLMQVT 300
  301 MGTTATETLS VAGNIFVSQT EAPLLIRPYL ADMTLSEVHV VMTGGYATIA GSLLGAYISF 360
  361 GIDATSLIAA SVMAAPCALA LSKLVYPEVE ESKFRREEGV KLTYGDAQNL IEAASTGAAI 420
  421 SVKVVANIAA NLIAFLAVLD FINAALSWLG DMVDIQGLSF QLICSYILRP VAFLMGVAWE 480
  481 DCPVVAELLG IKLFLNEFVA YQDLSKYKQR RLAGAEEWVG NRKQWISVRA EVLTTFALCG 540
  541 FANFSSIGIM LGGLTSMVPQ RKSDFSQIVL RALFTGACVS LVNACMAGIL YMPRGAEVDC 600
  601 MSLLNTTLSS SSFEIYQCCR EAFQSVNPEF SPEALDNCCR FYNHTICAQ