YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114602454
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALALAALAA VEPACGSRYQ QLQNEEESGE PEQAAGDAPP PYSSISAEST AYFDYKDESG  60
   61 FPKPPSYNVA TTLPSYDEAE RTKAEATIPL VPGRDEDFVG RDDFDDADQL RIGNDGIFML 120
  121 TFFMAFLFNW IGFFLSFCLT TSAAGRYGAI SGFGLSLIKW ILIVRFSTYF PGYFDGQYWL 180
  181 WWVFLVLEDL SIMQKFGRCQ KLSQISPGPE FSLFIKDVFW QRPSCIYEFS LKKQENTCRK 240
  241

Type	Start	End	Confidence
Signal Peptide	1	16	0.94
N-region	1	7
H-region	8	13
C-region	14	16
Cleavage Site	16	17
Non-Cytoplasmic	17	116	0.96
Transmembrane Helix	117	139	0.89
Cytoplasmic	140	146	0.71
Transmembrane Helix	147	169	0.80
Non-Cytoplasmic	170	177	0.78
Transmembrane Helix	178	197	0.74
Cytoplasmic	198	240	0.84