YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114608154
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPVTGQMI RVRPPFRSRF YPPPLSPPPV PPSSPSSLSP SLWRLQPTFA SRQQPLAEEC  60
   61 PASSALQRRW LWRWRWWRRR RRQRRSSGSC QGQPAGPLGG PPASRGAAPQ GSMAMNYNAK 120
  121 DEVDGGPPCA PGGTAKTRRP DNTAFKQQRL PAWQPILTAG TVLPIFFIIG LIFIPIGIGI 180
  181 FVTSNNIREI EIDYTGTEPS SPCNKCLSPD VTPCFCTINF TLEKSFEGNV FMYYGLSNFY 240
  241 QNHRRYVKSR DDSQLNGDSS ALLNPSKECE PYRRNEDKPI APCGAIANSM FNDTLELFLI 300
  301 GNDSYPIPIA LKKKGIAWWT DKNVKFRNPP GGDNLEERFK GTTKPVNWLK PVYMLDSDPD 360
  361 NNGFINEDFI VWMRTAALPT FRKLYRLIER KSDLHPTLPA GRYSLNVTYN YPVHYFDGRK 420
  421 RMILSTISWM GGKNPFLGIA YIAVGSISFL LGVVLLVINH KYRNSSNTAD ITI

Type	Start	End	Confidence
Cytoplasmic	1	155	0.69
Transmembrane Helix	156	182	0.84
Non-Cytoplasmic	183	436	0.62
Transmembrane Helix	437	458	0.94
Cytoplasmic	459	473	0.60