YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114615290
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGAAAAAAA AAMLPAQEAA KLYHTNYVRN SRAIGVLWAI FTICFAIVNV VCFIQPYWIG  60
   61 DGVDTPQAGY FGLFHYCIGN GFSRELTCRG SFTDFSTLPS GAFKAASFFI GLSMMLIIAC 120
  121 IVCFTLFFFC NTATVYKICA WMQLTSAACL VLGCMIFPDG WDSDEVKRMC GEKTDKYTLG 180
  181 ACSVRWAYIL AIIGILDALI LSFLAFVLGN RQDSLMAEEL KAENKDDGNA

Type	Start	End	Confidence
Cytoplasmic	1	33	0.78
Transmembrane Helix	34	59	0.84
Non-Cytoplasmic	60	104	0.81
Transmembrane Helix	105	129	0.90
Cytoplasmic	130	137	0.70
Transmembrane Helix	138	159	0.88
Non-Cytoplasmic	160	186	0.80
Transmembrane Helix	187	208	0.95
Cytoplasmic	209	230	0.81