YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114616712, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGFQKGKYG TMAEGRSEDN LSAAPPALRI ILVGKTGCGK SATGNSILGQ PVFESKLRAQ  60
   61 SVTRTCQVKT GTWNGRKVLV VDTPSIFESQ ADTQELYKNI GDCYLLSAPG PHVLLLVIQL 120
  121 GRFTAQDKVA IRKVKEVFGA GAMRHVVILF THKEDLGGQA LDDYVANTDN CSLKDLVREC 180
  181 ERRYCAFNNW GSVEEQRQQQ AELLAVIERL GREREGSFHS NDLFLDAQLL QRTGAGACRE 240
  241 DYRQYQAKVE WQVEKHKQEL RENESNWAYK ALLRVKHLML LHYEIFVFLL LCSILFFIIF 300
  301 LFIFHYI

Type	Start	End	Confidence
Cytoplasmic	1	279	0.88
Transmembrane Helix	280	304	0.88
Non-Cytoplasmic	305	307	0.72