YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114619242
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.49
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQRGQNAPA ASGARKRHGP GPREARGARP GLRVPKTLVL IVAAVLLLVS AESALITQQD  60
   61 LAPQQRAAPQ QKRSSPSEGL CPPGHHISED SRDCISCKYG QDYSTHWNDL LFCLRCTRCD 120
  121 SGEVEVSPCT TTRNTACQCE EGTFREEDSP EMCRKCRTRC PRGMVKVGDC TPWSDIECVH 180
  181 KESGIIIGVA VAAVVLIVAV FVCKSLLWKK VLPYLKGICS GGGGDPERVD RSSQRPGAED 240
  241 NALNEIVSIL QPTQVPEQEM EVQEPAEPTG VNMSPGESEH LPEPAEAEGS QRRRLLVPAN 300
  301 EGDPTETLRQ CFDDFADLVP FDSWEPLMRK LGLMDNEIKV AKAEAAGHRD TLYTMLIKWV 360
  361 NKTGRDASVH TLLDALETLG ERLAKQKIED HLLSSGKFMY LEGNADSAMS

Type	Start	End	Confidence
Signal Peptide	1	53	0.68
N-region	1	44
H-region	45	50
C-region	51	53
Cleavage Site	53	54
Non-Cytoplasmic	54	183	0.98
Transmembrane Helix	184	208	0.65
Cytoplasmic	209	410	0.72