YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114627095
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPIWTPILP NLLQPACPCS PSSAQATPLG DIGSPIGQLN GGVAGRGESH WQRRDRRCVR  60
   61 NMAERGRKRP CGPGEHGQRI EWRKWKQQKK EEKKKWKDLK LMKKLERQRA QEEQAKRQEE 120
  121 EEAAAEKEDR GRPYTLSVAL PGSILDNAQS PELRTYLAGQ IARACAIFCV DEIVVFDEEG 180
  181 QDAKTVEGEF TGVGKKGQAC VQLARILQYL ECPQYLRKAF FPKHQDLQFA GLLNPLDSPH 240
  241 HMRQDEESEF REGIVVDRPT RPGHGSFVNC GMKKEVKIDK NLEPGLRVTV RLNQQQLPDC 300
  301 KTYHGKVVSS QDPRTKAGLY WGYTVRLASC LSAVFAEAPF QDGYDLTIGT SERGSDVASA 360
  361 QLPNFRHALV VFGGLQGLEA GADADPNLEV AEPSVLFDLY VNTCPGQGSR TIRTEEAILI 420
  421 SLAALQPGLT QAGARHT

Type	Start	End	Confidence
Signal Peptide	1	26	0.86
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	437	0.99