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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114637597
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKERGGVSEE TKASETPLEL AVPYNFSRGM SQRTVKGRQT AHSGLLFRIS HSKQESLRGL  60
   61 DQKVKEGEEA NNSDLQRHQG GTKSVWAESG RAVAVAGAAA RGAGRSGPGH PLPVPWRGSV 120
  121 GSGSTGGGGG PRATCGARRP PCTRDASPSG TLRGLLRRAV RREPAGPRAG GAGGTMRRQW 180
  181 GALLLGALLC AHGLASSPEC ACGRSHFTCA VSALGECTCI PAQWQCDGDN DCGDHSDEDG 240
  241 CILPTCSPLD FHCDNGKCIR RSWVCDGDND CEDDSDEQDC PPRECEEDEF PCQNGYCIRS 300
  301 LWHCDGDNDC GDNSDEQCDM RKCSDKEFRC SDGSCIAEHW YCDGDTDCKD GSDEENCPSA 360
  361 VPVPPCNLEE FQCAYGRCIL DIYHCDGDDD CGDWSDESDC SSHQPCRSGE FMCDSGLCIN 420
  421 AGWRCDGDAD CDDQSDERNC TTSMCTAEQF RCHSGRCVRL SWRCDGEDDC ADNSDEENCE 480
  481 NTGSPQCASD QFLCWNGRCI GQRKLCNGVN DCGDNSDESP QQNCRPRTGE ENCNVNNGGC 540
  541 AQKCQMVRGA VQCTCHTGYR LTEDGHTCQD VNECAEEGYC SQGCTNSEGA FQCWCETGYE 600
  601 LRPDRRSCKA LGPEPVLLFA NRIDIRQVLP HRSEYTLLLN NLENAIALDF HHRRELVFWS 660
  661 DVTLDRILRA NLNGSNVEEV VSTGLESPGG LAVDWVHDKL YWTDSGTSRI EVANLDGAHR 720
  721 KVLLWQNLEK PRAIALHPME GTIYWTDWGN TPRIEASSMD GSGRRIIADT HLFWPNGLTI 780
  781 DYAGRRMYWV DAKHHVIERA NLDGSHRKAV ISQGLPHPFA ITVFEDSLYW TDWHTKSINS 840
  841 ANKFTGKNQE IIRNKLHFPM DIHTLHPQRQ PAGKNRCGDN NGGCTHLCLP SGQNYTCACP 900
  901 TGFRKISSHA CAQSLDKFLL FARRMDIRRI SFDTEDLSDD VIPLADVRSA VALDWDSRDD 960
  961 HVYWTDVSTD TISRAKWDGT GQEVVVDTSL ESPAGLAIDW VTNKLYWTDA GTDRIEVANT1020
 1021 DGSMRTVLIW ENLDRPRDIV VEPMGGYMYW TDWGASPKIE RAGMDASGRQ VIISSNLTWP1080
 1081 NGLAIDYGSQ RLYWADAGMK TIEFAGLDGS KRKVLIGSQL PHPFGLTLYG ERIYWTDWQT1140
 1141 KSIQSADRLT GLDRETLQEN LENLMDIHVF HRRRPPVSTP CAMENGGCSH LCLRSPNPSG1200
 1201 FSCTCPTGIN LLSDGKTCSP GMNSFLIFAR RIDIRMVSLD IPYFADVVVP INITMKNTIA1260
 1261 IGVDPQEGKV YWSDSTLHRI SRANLDGSQH EDIITTGLQT TDGLAVDAIG RKVYWTDTGT1320
 1321 NRIEVGNLDG SMRKVLVWQN LDSPRAIVLY HEMGFMYWTD WGENAKLERS GMDGSDRAVL1380
 1381 INNNLGWPNG LTVDKASSQL LWADAHTERI EAADLNGANR HTLVSPVQHP YGLTLLDSYI1440
 1441 YWTDWQTRSI HRADKGTGSN VILVRSNLPG LMDMQAVDRA QPLGFNKCGS RNGGCSHLCL1500
 1501 PRPSGFSCAC PTGIQLKGDG KTCDPSPETY LLFSSRGSIR RISLDTSDHT DVHVPVPELN1560
 1561 NVISLDYDSV DGKVYYTDVF LDVIRRADLN GSNMETVIGR GLKTTDGLAV DWVARNLYWT1620
 1621 DTGRNTIEAS RLDGSCRKVL INNSLDEPRA IAVFPRKGYL FWTDWGHIAK IERANLDGSE1680
 1681 RKVLINTDLG WPNGLTLDYD TRRIYWVDAH LDRIESADLN GKLRQVLVSH VSHPFALTQQ1740
 1741 DRWIYWTDWQ TKSIQRVDKY SGRNKETVLA NVEGLMDIIV VSPQRQTGTN ACGVNNGGCT1800
 1801 HLCFARASDF VCACPDEPDS RPCSLVPGLV PPAPRATGMS EKSPVLPNTP PTTLHSSTTR1860
 1861 TRTSLEEVEG RCSERDARLG LCARSNEAVP AAPGEGLHIS YAIGGLLSIL LILVVIAALM1920
 1921 LYRHKKSKFT DPGMGNLTYS NPSYRTSTQE VKIEAIPKPA MYNQLCYKKE GGPDHNYTKE1980
 1981 KIKIVEGICL LSGDDAEWDD LKQLRSSRGG LLRDHVCMKT DTVSIQASSG SLDDTETEQL2040
 2041 LQEEQSECSS VHTAATPERR GSLPDTGWKH ERKLSSESQV 

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