YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114639248
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPAATEVQL RLQGQKDMAW KWMPLLLLLV WVATMCSAQD RTDLLNVCMD AKHHKTKPGP  60
   61 EDKLHDQCSP WKKNACCTAS TSQELHKDTS RLYNFNWDHC GKMEPACKRH FIQDTCLYEC 120
  121 SPNLGPWIQQ VNQSWRKERF LDVPLCKEDC QRWWEDCHTS HTCKSNWHRG WDWTSGVNKC 180
  181 PAGALCRTFE SYFPTPAALC EGLWSHSYKV SNYSRGSGRC IQMWFDSAQG NPNEEVARFY 240
  241 AAAMHVNAGE MLHGIGGLLL SLALMLQLWL LG

Type	Start	End	Confidence
Signal Peptide	1	38	0.91
N-region	1	29
H-region	30	35
C-region	36	38
Cleavage Site	38	39
Non-Cytoplasmic	39	250	0.93
Transmembrane Helix	251	271	0.58
Cytoplasmic	272	272	0.57