YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114650197
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSSAVVRY LRVCVACGLC AFLFFAYLYD IKTLFLTRRK RPLTSETAGT PARPRWPVGS  60
   61 RCRARYLLSL PKCPTSIIFC VCCDVNEERG PIPCQPLSLC GEKAHWLVPA RNSRTQKRPI 120
  121 KDGSFPPPAR LLRPPTRQVD NLDSSPGLAL LFHLLPPSYT LPLAARLARR RSQRVCASGP 180
  181 SMLNSARGAP ELLRGTATNA EVSAAAAGAT GSEELPPGDR GCRNGGGRGP AATTSSTGVA 240
  241 VGAEHGEDSL SRKPYPEPGR MDHHQPGTGR YQVLLNEEDN SESSAIEQPS TSNPAPQIVQ 300
  301 AASSAPALET DSSPPPYSSI TVEVPTTSDT EVYGEFYPVP PPYSVATSLP TYDEAEKAKA 360
  361 AAMAAAAAET SQRIQEEECP PRDDFSDADQ LRVGNDGIFM LAFFMAFIFN WLGFCLSFCI 420
  421 TNTIAGRYGA ICGFGLSLIK WILIVRFSDY FTGYFNGQYW LWWIFLVLGL LLFFRGFVNY 480
  481 LKVRNMSESM AAAHRTRYFF LL

Type	Start	End	Confidence
Cytoplasmic	1	9	0.78
Transmembrane Helix	10	29	0.85
Non-Cytoplasmic	30	397	0.98
Transmembrane Helix	398	418	0.91
Cytoplasmic	419	424	0.73
Transmembrane Helix	425	444	0.91
Non-Cytoplasmic	445	458	0.86
Transmembrane Helix	459	479	0.93
Cytoplasmic	480	502	0.94