YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114653947
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPFLPAFAT FCCKQCQGDV GIHSSSPVCN FQIHDYLLEL VAEEVECLSA PRYHQGVKGA  60
   61 WECLQTAPPP ETQPHSPPAR LGGRWAGPAK GLVAVSYWGL VAMVSLAFKL ILSLHASLQN 120
  121 GAGGISRSEV SHVGPPGSGA VEALGGERVS STMSGLSGPP ARRGPFPLAL LLLFLLGPSL 180
  181 VLAISFHLPI NSRKCLREEI HKDLLVTGAY EISDQSGGAG GLRSHLKITD SAGHILYSKE 240
  241 DATKGKFAFT TEDYDMFEVC FESKGTGRIP DQLVILDMKH GVEAKNYEEI AKVEKLKPLE 300
  301 VELRRLEDLS ESIVNDFAYM KKREEEMRDT NESTNTRVLY FSIFSMFCLI GLATWQVFYL 360
  361 RRFFKAKKLI E

Type	Start	End	Confidence
Cytoplasmic	1	92	0.85
Transmembrane Helix	93	113	0.85
Non-Cytoplasmic	114	165	0.80
Transmembrane Helix	166	188	0.90
Cytoplasmic	189	337	0.79
Transmembrane Helix	338	359	0.91
Non-Cytoplasmic	360	371	0.77