YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114658678
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVQGENSVS LAEGWEGDRQ DLPRTRRTWK LGPQHQGGSK VRVWEHGDEA LVTRTGTRNR  60
   61 FYPPTPERLR AIGRAGTEAR LPKVAEQPPQ LSLGRRLGEG PRGRAREVAS SRFLAGESQS 120
  121 RRGAGGGDRA RPCQLPPRKR KCKHCGVLSS VSPTRAPVVP PAGHRALSPA GVLLAVPAML 180
  181 SLDFLDDVRR MNKRQLYYQV LNFGMIVSSA LMIWKGLMVI TGSESPIVVV LSGSMEPAFH 240
  241 RGDLLFLTNR VEDPIRVGEI VVFRIEGREI PIVHRVLKIH EKQNGHIKFL TKGDNNAVDD 300
  301 RGLYKQGQHW LEKKDVVGRA RGFVPYIGIV TILMNDYPKF KYAVLFLLGL FVLVHRE

Type	Start	End	Confidence
Cytoplasmic	1	195	0.57
Transmembrane Helix	196	218	0.76
Non-Cytoplasmic	219	357	0.76