YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114662604
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVAKLIQCI VFGPLRVSER QHLKDKFWNF IFYKFIFIFG VLNVQTVEEV VMWCLWFAGL  60
   61 VFLHLMVQLC KDRFEYLSFS PTTPMSSHGR VLSLLVAMLL SCCGLAAVCS ITGYTHGMHT 120
  121 LAFMAAESLL VTVRTAHVIL RYVIHLWDLN HEGTWEGKGT YVYYTDFVME LTLLSLDLMH 180
  181 HIHMLLFGNI WLSMASLVIF MQLRYLFHEV QRRIRRHKNY LRVVGNMEAR FAVATPEELA 240
  241 VNNDDCAICW DSMQAARKLP CGHLFHNSCL RSWLEQDTSC PTCRMSLNIA DNNRVREEHQ 300
  301 GENLDENLVP VAAAEGRPRL NQHNHFFHFD GDDSSMCVTA PEDVPVGQEV EVVDSDTDAP 360
  361 DLWSRIASWL PSFSVEVMHT TNILGITQAS NSQLNAMAHQ IQEMFPQVPY HLVLQDLQLT 420
  421 RSVEITTDNI LEGRIQVPFP TQRSDSIRPA LNSPVERPSS DQEEGETSAQ TERVPLDLSP 480
  481 RLEETLDFGE VEVEPSEVED FEARGSRFSK SADERQRMLV QRKDELLQQA RKRFLNKSSE 540
  541 DDAASESFLP SEGASSDPVT LRRRMLAAAA ERRLQKQQTS

Type	Start	End	Confidence
Cytoplasmic	1	26	0.94
Transmembrane Helix	27	46	0.84
Non-Cytoplasmic	47	51	0.73
Transmembrane Helix	52	70	0.91
Cytoplasmic	71	90	0.88
Transmembrane Helix	91	114	0.92
Non-Cytoplasmic	115	184	0.46
Transmembrane Helix	185	207	0.88
Cytoplasmic	208	580	0.64