YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLDN5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSAALEILG LVLCLVGWGG LILACGLPMW QVTAFLDHNI VTAQTTWKGL WMSCVVQSTG  60
   61 HMQCKVYDSV LALSTEVQAA RALTVSAVLL AFVALFVTLA GAQCTTCVAP GPAKARVALT 120
  121 GGVLYLFCGL LALVPLCWFA NIVVREFYDP SVPVSQKYEL GAALYIGWAA TALLMVGGCL 180
  181 LCCGAWVCTG RPDLSFPVKY SAPRRPTATG DYDKKNYV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.93
Transmembrane Helix	8	30	0.91
Non-Cytoplasmic	31	81	0.93
Transmembrane Helix	82	102	0.87
Cytoplasmic	103	120	0.69
Transmembrane Helix	121	142	0.92
Non-Cytoplasmic	143	164	0.90
Transmembrane Helix	165	189	0.89
Cytoplasmic	190	218	0.97