YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114678742
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNPENHFRD PIGSDSEFLI SRPSRSDGTG NVLGPRRERN EQVRGFNLQG DPKTRQRSVG  60
   61 TCGPRGAGLN PKAGDSPESA SSPARSASGS AGTCACASAL GRRKGCFVSN KYQRSLAFRA 120
  121 TTGLRVLVVV VPQTQLSFLS SLCLVSLFLH SLVSAHGEKP TNPVGLDPTL FQVVVGILGN 180
  181 FSLLYYYMFL YFRRYKPRST DLILRHLTVA DSLVILSRRI PETMATFGLK HFDNYFGCKF 240
  241 LLYAHRVGRG VSIGSICLLS VFQVITINPR NSRWAEMKVK APTYIGLSNI LCWAFHMLVN 300
  301 AIFPVYTTGK WSNNNITKKG DLGYCSAPLS DEVTKSVYAA LTSFHDVLCL GVMLWASSSI 360
  361 VLVLYRHKQQ VQHICRNNIY PISSPGNRAI QSILALVSTF ALCYALSFIT YVYLALFDNS 420
  421 SWWLVNTAAL IIACFPTISP FVLMCCDPSR SRLCSICCRR NRLFFHDFRK M

Type	Start	End	Confidence
Cytoplasmic	1	125	0.95
Transmembrane Helix	126	150	0.82
Non-Cytoplasmic	151	168	0.86
Transmembrane Helix	169	190	0.93
Cytoplasmic	191	201	0.91
Transmembrane Helix	202	221	0.65
Non-Cytoplasmic	222	246	0.64
Transmembrane Helix	247	267	0.69
Cytoplasmic	268	282	0.88
Transmembrane Helix	283	304	0.88
Non-Cytoplasmic	305	343	0.93
Transmembrane Helix	344	365	0.89
Cytoplasmic	366	392	0.90
Transmembrane Helix	393	415	0.90
Non-Cytoplasmic	416	422	0.85
Transmembrane Helix	423	445	0.91
Cytoplasmic	446	471	0.97