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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|114679093
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.82
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGAGRGLGV WGNLVLLGLC SWTGARAPAP NPGRNLTVET QTTSSISLSW KAPDGTDSQN  60
   61 SNYSVQCTGD GGRSETRTTR YTVIVYGLGP GSLYTCSVSV EKDGVNSSVG TVTGATAPNP 120
  121 VRNLRVEAQT NSSITLTWEA DGPDPQNSTY WVEYTGDGGT AGTRSTANTN ITVDGLEPGC 180
  181 LYAFSVWVGK NGINSSRETR NATIAAYPVR NLTVEAQTTS SISLSWEVPD GTDSQNSTYC 240
  241 VQCTGDGGRT ETRNTTDTRV TVDGLGPGSL YTCSVWVEKD GVNSSVEIVT SATAPNPVRN 300
  301 LTVEAQTNSS ITLTWEADGP DPQNSTYWVE YTGDGGTAGT RSTANTNITV DRLEPGCLYA 360
  361 FSVWVGKNGI NSSRETRNAT TAPNPVRNLH METQTNSSIA LSWEVPSGPD PQDYTYWVEY 420
  421 TGDGGGTETR NTTNISVTAE GLEPGTLYTF SVWAEKNGAR GSRQNVSFST VPNAVTSLSK 480
  481 QDWTNSTIAL RWTAPEGPGQ SSYSYWVSWV REGMTDPRTQ STSGTDITLK ELEAGSLYHL 540
  541 TVWAERNEVR GYNSTLTAAT APNEVTDLQN ETQTKNSVML WWKAPGDPHS QLYVYWVQWA 600
  601 SKGHPQRGQD PQANWVNQTS RTNETWYKVE ALEPGTLYNF TVWAERNDVA SSTQSLCAST 660
  661 YPDAVTITSC VSTSAGYGVN LIWSCPQGGY EAFELEVGGQ RGSQDRSSCG EAVSVLGLGP 720
  721 ARSYPATITT IWDGMKVVSH SVVCHTESAG VIAGAFVGIL LFLILVGLLI FFLKRRNNKK 780
  781 QQKPELRNLV FSSPGDIPAE DFADHVRKNE RDSNCGFADE YQQLSLVGHS QSQMVASASE 840
  841 NNAKNRYRNV LPYDWSRVPL KPIHEEPGSD YINASFMPGL WSPQEFIATQ GPLPQTVGDF 900
  901 WRLVWEQQSH TLVMLTNCME AGRVKCEHYW PLDSQPCTHG HLRVTLVGEE VMENWTVREL 960
  961 QLLQVEEQKT LSVRQFHYQA WPDHGVPSSP DTLLAFWRML RQWLDQTMEG GPPIVHCSAG1020
 1021 VGRTGTLIAL DVLLRQLQSE GLLGPFSFVR KMRESRPLMV QTEAQYVFLH QCILRFLQQS1080
 1081 AQAPAKKEVP YEDVENLIYE NVAAIQAHKL EV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle