YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12003268, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.55
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVPPPAPRS FLCRALCLFP RVFAAEAVTA DSEVLEERQK RLPYVPEPYY PESGWDRLRE  60
   61 LFGKDEQQRI SKDLADICKT AATAGIIGWV YGGIPAFIHA KQQYIEQSQA EIYHNRFDAV 120
  121 QSAHRAATRG FIRYGWRWGW RTAVFVTIFN TVNTSLNVYR NKDALSHFVI AGAVTGSLFR 180
  181 INVGLRGLVA GGIIGALLGT PVGGLLMAFQ KYSGETIQER KQKDRKALHE LKLEEWKGRL 240
  241 QVTEHLPEKI ESSLQEDEPE NDAKKIEALL NLPRNPSVID KQDKD

Type	Start	End	Confidence
Signal Peptide	1	24	0.65
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	187	0.61
Transmembrane Helix	188	209	0.81
Cytoplasmic	210	285	0.55