YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LIM2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYSFMGGGLF CAWVGTILLV VAMATDHWMQ YRLSGSFAHQ GLWRYCLGNK CYLQTDSIAY  60
   61 WNATRAFMIL SALCAISGII MGIMAFAHQP TFSRISRPFS AGIMFFSSTL FVVLALAIYT 120
  121 GVTVSFLGRR FGDWRFSWSY ILGWVAVLMT FFAGIFYMCA YRVHECRRLS TPR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.82
Transmembrane Helix	9	29	0.92
Non-Cytoplasmic	30	65	0.95
Transmembrane Helix	66	87	0.94
Cytoplasmic	88	98	0.87
Transmembrane Helix	99	122	0.87
Non-Cytoplasmic	123	139	0.86
Transmembrane Helix	140	161	0.94
Cytoplasmic	162	173	0.94