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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115258353, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.43
Topology Confidence: 0.12
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPNLRNFAL WAIIALLLIA LFSMFQTAPA QTGSREIPYS QFLREVDAGR VKDVVVTGNR  60
   61 LSGSYVENGT TFQTYSPVID DSLLDRLQSK NVLVSARPET DGSSGFLSYL GTLLPMLLIL 120
  121 GVWLFFMRQM QGGSRGAMGF GKSKAKLLTE AHGRVTFEDV AGVDEAKQDL EEIVEFLRDP 180
  181 QKFQRLGGKI PRGVLLVGPP GTGKTLLARS VAGEANVPFF TISGSDFVEM FVGVGASRVR 240
  241 DMFEQAKKNA PCIIFIDEID AVGRHRGAGL GGGNDEREQT LNQLLVEMDG FEANEGVILI 300
  301 AATNRPDVLD PALLRPGRFD RQVVVPNPDI VGRERILKVH ARNVPLAPNV DLKILARGTP 360
  361 GFSGADLMNL VNEAALMAAR RNKRVVTMQE FEDAKDKIMM GAERRSSAMT EAEKKLTAYH 420
  421 EAGHAMTALN VAVADPLHKA TIIPRGRALG MVMQLPEGDR YSMSYKWMVS RLCIMMGGRV 480
  481 AEELTFGKEN ITSGASSDIE QATKLARAMV TQWGFSDQLG QVAYGENQQE VFLGHSVSQS 540
  541 KNVSEATAQK IDNEVRRLID EAYTQARKIL TEKHDEFVVL AEGLLEYETL TGEEIKALIR 600
  601 GEKPSRDLGD DSPPSRGSAV PKAGARPATK GDEPEGGLEP QPH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle