YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115254543, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.96
Transmembrane Helix	35	57	0.89
Non-Cytoplasmic	58	66	0.84
Transmembrane Helix	67	89	0.89
Cytoplasmic	90	98	0.83
Transmembrane Helix	99	133	0.75
Non-Cytoplasmic	134	173	0.46
Transmembrane Helix	174	203	0.78
Cytoplasmic	204	243	0.64
Transmembrane Helix	244	266	0.91
Non-Cytoplasmic	267	273	0.81
Transmembrane Helix	274	295	0.92
Cytoplasmic	296	304	0.89
Transmembrane Helix	305	324	0.93
Non-Cytoplasmic	325	331	0.63
Transmembrane Helix	332	352	0.91
Cytoplasmic	353	364	0.77
Transmembrane Helix	365	385	0.93
Non-Cytoplasmic	386	391	0.80
Transmembrane Helix	392	413	0.89
Cytoplasmic	414	559	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIYCRWRAI TKAGEIVAYT SSTLAPLRHD TYRTIWFASL SSNFGGLIQA VGAAWMMTTI  60
   61 TASEDMVALV QTSTALPIML FSLISGALAD NYDRRRVMLT AQCMMLTVSA LLTASALLGW 120
  121 ITPWLLLFFT FLIGCGTALN NPSWQASVGD MVPRADLPAA VTLNSMGFNI TRSVGPAIGG 180
  181 VIVAAAGAAA AFAVNTLSYL ALIYALLRWR PAAPVSTLPR EALGSAIFAG LRYVSMSPNL 240
  241 EKVLVRGLLF GIGASSILAL LPVVALDLVA GGPLTYGFML GAFGIGAIGG AVLNARLRQV 300
  301 LSSEMIVRLS FAGFALSAVI AALSPSAVLT SAGLLVSGAC WVSALSLFNT IVQLSTPRWV 360
  361 VGRALSLYQT VTFGGIAGGS WLWGIAADRY GVADALLMSS VVMLLGIAIG LRFSMPAFAS 420
  421 LNLDPLNRFI EPALSLDITP RSGPIVIQVD YEIADEDLAE FMELMGERRR IRIRDGARNW 480
  481 ALMRDLENPS LWTETYHTPT WVEYIRHNQR RTQADAENTD RLRALHRGEG PLHVHRMIER 540
  541 QAIPPDNDVF HKAPIDLHH