YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115529435, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.96
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNVLVIRLA LLLPFLLETA HGHYGFVQFT CHMLGSLQNV EVTYSIYFDT TELLRFNSTE  60
   61 NKAVAYTEYA MKWANDLNKQ PKWLHEQVEK NIADCKLFRE TYFPLVAKTV KPEVYVRSLR 120
  121 EASGKRPALL SCSAYNFYPK HIKLTWMRDD KVVTADVMST KVMADGDWYY QIHSHLEYFP 180
  181 QPGEKISCVV EHASSHKPMI YYWDSFLTES DKNKIITGAA GIVLGAIMAA GGLIYYKRKH 240
  241 TVKSHVHVLI Y

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	214	0.99
Transmembrane Helix	215	236	0.92
Cytoplasmic	237	251	0.94