YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116003875, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAGLSPARC PGRWLVPGLW LLALSGPGGL LSAQEQPSCH GAFDLYFVLD KSGSVANNWI  60
   61 EIYNFVQQLT ERFVSPQMRL SFIVFSSQAT IILPLTGDRG KISEGLDNLK HVSPVGETYI 120
  121 HEGLKLANEQ IEKARDLKTS SIIIALTDGK LDGLVPSYAE KEAKISRSLG ARVYCVGVLD 180
  181 FEQAQLERIA DSKEQVFPVK GGFQALRGII NSILAQSCTE ILELRPSSVC VGQEFQVVLN 240
  241 GRGFNLGSRK GSVLCTYTVN ETYTINEKPV SVEQNSMLCP APTLHEVGET LHVSVSFNEG 300
  301 KSVISSSLIV TATECSTGIA ALIAILVLLL LLGIGLMWWF WPLCCKVVIK DPPPPPPSAP 360
  361 KEEEEEPLPT KKWPTVDASY YGGRGVGGIK RMEVRWGDKG STEEGARLEK AKNAVVTLPE 420
  421 EPEEPVRPRP PPSKPTHQPP QTKWYTPIKG RLDALWALLR RQYDRVSLMR PQEGDEGRCI 480
  481 NFSRVPSQ

Type	Start	End	Confidence
Signal Peptide	1	33	0.98
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	317	0.99
Transmembrane Helix	318	340	0.94
Cytoplasmic	341	488	0.99