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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|118403704, gi...
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNIYEEKQT MIAAGDLQEF VPLGRDHSKH HPNALNLQLR QLQPASELWS SDGAAGLVGS  60
   61 LREVTIHEKN KESWQLRKGV GDPGEDAEYD EELYVAGNVV IWSKGSKIQA STVYKAFTVD 120
  121 SPVVQALWCD FTIFNDKNDN ETDEGKLEKC VCVLQSSCIN VHNTDGKDYI APLPFQVANV 180
  181 WPTKYGLLFE RNSNSTLHEV PQSPPREPLP TIFSMLHPLD EITPLVSRSG GIFGSSRVHY 240
  241 VSDPTLRIVF THSDPSIVMT YDTVQGSHTV WALRKVKAEE QNAVLNLEQI GTPQHGMTTS 300
  301 SLTAHLRSVS KGESPTASPF QNFSSLHSQS RSVSSPSIHS RSHSPSISNM AALSRSHSPA 360
  361 LGVHSFAGVQ RFNFSSNTPS PKRLGASGSP NSTSSDFLSV ETEPIVPELC LDHLWTETVA 420
  421 NIREKNSQAT KVFITTDLCG QKFLCFLLES FHQLRLVKFE ESNDKSQLIF GSVTNISAKD 480
  481 AAPVEAIDTM VVLENNGNLV LYTGVVRVGK IFIQGLAAPS LGMSNPMPRP STPLESISTP 540
  541 AKPLNKHLAP MDEAGMLSPV PELRDSTRLH ESTYLDDCTF HQFGTYIHSV RDPVHNRLTL 600
  601 EINNGSMVRI SIPDIATSEL VKKCLQAIKY ILPKEIAVQM LVKWYNCHNA PGGPTNHSEW 660
  661 NMFVTCLMNM MGYNTDKLSW TRNCDFEGSL SPVIAPKKAR PSETGSDEDW EYLINSDYHR 720
  721 NVETHILARA LQLDSLDALV AKDDIQNVVS LDSSALLFSH APAIFYVLHL TYEELKLNTL 780
  781 MREGIQSLVM LLLQLARDLN LDTYMDFYFR DYPTLVKTTN QTCRIEPTQI GFMNYPSFFT 840
  841 AEPPSIYHWL SSRLKGEKVT PYPYLPGICE RSKLVVLSFA LYILGDETAV LHEPRKYLCK 900
  901 ITAGQRKQQL GDDRRYSLKP TPSVSGLSEK LVVWMTNIGF TLQDLESLPF GVALPIRHAI 960
  961 YQCRQQPASD WAQGVCILIG RQDLSKQACD GNLPKAKPSA GPVPSPEVPP AADAEEEDDG1020
 1021 MNDLNQEVMS LIWSEDLRVQ EVRRLLQSSH PVRVNVVQMP EVSDHEFIEE KENRLLQLSQ1080
 1081 RTMALPVGRG MFTLFSYHPV PTEPLPIPKL NLTGRAPPRN TTVDLNSGNI DVPPNMACWA1140
 1141 NFHNGVAAGL KIAPASQIDS AWIVYNKPKN AELANEYAGF LMALGLNGHL TKLATLNIHD1200
 1201 YLTKGHEMTS IGLLLGVSAA KLGTMDISIT RLLSIHIPAL LPPTSTELDV PHNVQVAAVI1260
 1261 GIGLVYQGTA HRHIAEVLLA EIGRPPGPEM EYCTDRESYS LAAGLALGMV CLGHGSNLIG1320
 1321 MSDLNVPEQL YQYMVGGHKR SHVGVSREKH KSPSYQIKEG DTINVDVTCP GATLALAMIY1380
 1381 LKTNNRSIAD WLRAPDTMYL LDFVKPEFLL LRTLARCLIL WDDILPNAQW VNSNVPQIIT1440
 1441 DNSISLNATE QPSSEDLNLE TLAQAHVYII AGACLALGFR FAGTANLSAF NCLCKFAKDF1500
 1501 ECLSAQAAGI TGHYNLETCL SVVLLSLSMV MAGSGNLKVL QLCRFMHKKT GGEMNYGFHL1560
 1561 AHHMALGLLF LGGGRYSLST SNSSIAALLC ALYPHFPVHS TDNRYHLQAL RHLYVLASEP1620
 1621 RLLVPVDVDT NLPCYVLLEV TYKGTQWYEE TTEELMAPTL LPEFHLLRQI KVKGPRYWEI1680
 1681 VIDLRKGTEH LKSILSKDGV LYVKLRAGQL SYKEDPMGWR SLLAQAVTRR NSEVLTFKPE1740
 1741 AISAFTSDPA LLSFADYFCK STTDMGQKQD ILDLFSSILY ECVTQENPEM LPAYIAIDQA1800
 1801 VRRLERRETT ETFELWQIKL VLEFFSSAGL QERMKKNSNR GLFMNSEFLP IMKCTIDNTL1860
 1861 DQWLQANGDV ALHSYLAAQA VEDSQLSMLA CFLVYHSVPE PKQLSEGGLQ GSESFSELLL1920
 1921 KFKDLKMPVR ALLRLAPILL GNPQSMVL

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