YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGV
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.86
Transmembrane Helix	15	33	0.91
Non-Cytoplasmic	34	82	0.92
Transmembrane Helix	83	102	0.88
Cytoplasmic	103	113	0.76
Transmembrane Helix	114	134	0.92
Non-Cytoplasmic	135	150	0.81
Transmembrane Helix	151	176	0.80
Cytoplasmic	177	188	0.82
Transmembrane Helix	189	214	0.82
Non-Cytoplasmic	215	236	0.83
Transmembrane Helix	237	260	0.87
Cytoplasmic	261	324	0.92
Transmembrane Helix	325	347	0.87
Non-Cytoplasmic	348	380	0.94
Transmembrane Helix	381	402	0.91
Cytoplasmic	403	469	0.92
Transmembrane Helix	470	490	0.87
Non-Cytoplasmic	491	493	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPQDPSRKE VLRFAVSCRI LTLMLQALFN AIIPDHHAEA FSPPRLAPSG FVDQLVEGLL  60
   61 GGLSHWDAEH FLFIAEHGYL YEHNFAFFPG FPLALLVGTE LLRPLRGLLS LRSCLLISVA 120
  121 SLNFLFFMLA AVALHDLGCL VLHCPHQSFY AALLFCLSPA NVFLAAGYSE ALFALLTFSA 180
  181 MGQLERGRVW TSVLLFAFAT GVRSNGLVSV GFLMHSQCQG FFSSLTMLNP LRQLFKLMAS 240
  241 LFLSVFTLGL PFALFQYYAY TQFCLPGSAR PIPEPLVQLA VDKGYRIAEG NEPPWCFWDV 300
  301 PLIYSYIQDV YWNVGFLKYY ELKQVPNFLL AAPVAILVAW ATWTYVTTHP WLCLTLGLQR 360
  361 SKNNKTLEKP DLGFLSPQVF VYVVHAAVLL LFGGLCMHVQ VLTRFLGSST PIMYWFPAHL 420
  421 LQDQEPLLRS LKTVPWKPLA EDSPPGQKVP RNPIMGLLYH WKTCSPVTRY ILGYFLTYWL 480
  481 LGLLLHCNFL PWT