YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115514164, gi...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTILCSRFH ATFFLPRSRI RHDFEQKQIT KAYFLCKICV RERLLISLNA VVCYLRCALF  60
   61 FNLKKRTMKG RWVKYLLMGT VVAMLAACSS KPTDRGQQYK DGKFTQPFSL VNQPDAVGAP 120
  121 INAGDFAEQI NHIRNSSPRL YGNQSNVYNA VQEWLRAGGD TRNMRQFGID AWQMEGVDNY 180
  181 GNVQFTGYYT PVIQARHTRQ GEFQYPIYRM PPKRGRLPSR AEIYAGALSD KYILAYSNSL 240
  241 MDNFIMDVQG SGYIDFGDGS PLNFFSYAGK NGHAYRSIGK VLIDRGEVKK EDMSMQAIRH 300
  301 WGETHSEAEV RELLEQNPSF VFFKPQSFAP VKGASAVPLV GRASVASDRS IIPPGTTLLA 360
  361 EVPLLDNNGK FNGQYELRLM VALDVGGAIK GQHFDIYQGI GPEAGHRAGW YNHYGRVWVL 420
  421 KTAPGAGNVF SG

Type	Start	End	Confidence
Cytoplasmic	1	71	0.69
Transmembrane Helix	72	88	0.70
Non-Cytoplasmic	89	432	0.99