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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115932072, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.34
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEIPIGASC WGAFAIRVFL ILYGEIQDRM MVVKYTDIDY HVFTDAARYV TQGESPYQRA  60
   61 TYRYTPILAF MLTPNIWLSP LFGKLLFCIF DIIAGLLIYD IIRIQSYSVS TATKGALVWL 120
  121 FNPLTAAVSS RGNAESIMAV LVLLVIRCLL KRQTKLCALT LALSVHFKIY PLTYCLPIYF 180
  181 YVTSPKRKFI HRRIWTKSKN VLERFLDLFW PTKERIELVA VFIVTFAALT AVMYHWYGDE 240
  241 FLSEAYFYHV TRRDVRHNFS PFFYMLYLTS DWSSSFLLGL LAFVPQVVLL VAFSLVYYRD 300
  301 IAFCCFAHTF VFVTFNKVCT SQYFLWYLTL LPLILPATMM SIKEGICLIT AWFLAQALWL 360
  361 LPAYYLEFEG KDTFIFIWLA GLIFFFTNVY ILIRLILTRE TFNRDRSLIT RMLVRDPASR 420
  421 VTLKEIENDA WLQQGRRTRR PSDPVITREQ ISEQLHDSIM DIMLNGKMAE RTAILESVEK 480
  481 DCYDHLSATY FLLAERKLKK QKEERLKFSA SDLRKAMVSG KPNQGAGGPR KPQDDLPLGS 540
  541 SKPGINNNSK QATPSQPSTT PPASKPVAIP GACAVGGKHD ARSLDDSPLS NSPRRHQIER 600
  601 EHLTIHPRHG RSIVKEGIGS LDDEEYQHQA EDEDLDSQES QENFPGDPQD TVAPSSPTDD 660
  661 MGGNGGSGKD TGGNGGNRQS LNSNRQAIQS KICTSVLNQI TEEEDEYESD EDRGMLRRLP 720
  721 SRDNRQPKTL SSSKDNVRQI KSSSKKFTPP PRGGYSSSDA SDDDSESRRR SDRFDLPHPT 780
  781 THRRGSKDGP PSSGSEGGGG SHNTHGGSGA SAGGSKQNGN AGKGNDSGGT NGNGTNGGGT 840
  841 KGSGKERKKS NELRESLKMS NLSVNSSNSS SSYSISKYAI DPANNTPSDS DDPNAEAKTW 900
  901 SRKNNLRKDH VTRSDSNLYI IPKNGEKPKH IHTSPSKSSL KRDSSNLSEK LNLDLNSNMP 960
  961 RRTSKEARDI RKKRNRIASA NGQGGRGKKD PNKKVESNCC RLI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle