YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116058230
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPSATCAR GCARSTTTSA SGINGYVRAS RARATRIACS SLGEGERGRE GGDVRGEIGL  60
   61 ARLPRPSVRR AVVRRDARTS GTSGRIQGNV AGDDGRAWWR NVTAKAAVDG GSESADASAS 120
  121 EDFGSEDEGT AGKPVNVLKT FLRRLVKPLQ DFGFGRTRLW EGGVGLFIIS GVAVTFIIWG 180
  181 WIQGLLSFAR KNSYQAFIEF PVACGIQVGT NVRVRGVKAG TVLSVQPSLE KVDVLVEMDD 240
  241 KNVPIPRNSV IEANQSGLIA ETIIDITPAL PIPNAQWGPL DSGCEGEGLI VCDRGKIKGV 300
  301 QGVSMDELVG ICTKLAREME RQNGVQQMFA TTESAQRLMT TLQPLLREAA QIAHELRPMM 360
  361 QNVNEQGTLD TLEDLAGKTS ATVEDIRRLK TTILTDENQE LLRQSISTLT KTLQHVEKVS 420
  421 GDISSVSGDP STRTNLRHLI QSLSRLVDA

Type	Start	End	Confidence
Cytoplasmic	1	161	0.90
Transmembrane Helix	162	182	0.93
Non-Cytoplasmic	183	449	0.87