YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116075557, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSPPPPQP RSRRRSRRDH LRTLQAERQR DLMDRSRRAV RWLQPGLVVK RWLLTSGIGL  60
   61 VLALLGAAVW ADLQPIYWTL WAIQESLGWI TRVLPRGITG PLVVLIGIGL LLWGQSRSFG 120
  121 SIQQALAPEK DTVLVDALRA KSRLNRGPNI VAIGGGTGLS TLLSGLKRYS SNITAIVTVA 180
  181 DDGGSSGVLR RELGVLPPGD IRNCLAALST EEPLLTRLFQ YRFAAGGGLE GHSFGNLFLS 240
  241 ALTAITGSLE TAITASSRVL AVQGQVVPAT NVDVRLWAEL ENGQRIEGES AIGHAPSPIV 300
  301 RLGCLPEQPP ALPRALEAIA HADLILLGPG SLYTSLLPNL LVPELVTAIQ RSRAPRLYIC 360
  361 NLMTQPGETD GLDVSGHLRA IEAQLASLGV SKRLFTAVLA QEELPDSPLI SHYRSRGAEP 420
  421 VICNRRDLQQ EGYEVMEAPL QGSRPTATLR HDPRSLALGV MRFYRRHKTD KQSLAS

Type	Start	End	Confidence
Cytoplasmic	1	50	0.94
Transmembrane Helix	51	71	0.95
Non-Cytoplasmic	72	92	0.89
Transmembrane Helix	93	114	0.90
Cytoplasmic	115	146	0.92
Transmembrane Helix	147	166	0.63
Non-Cytoplasmic	167	476	0.71